Plant MITE

SE2050489

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5691
Medicago truncatula
SE2050489
PIF/harbinger
To8
MtChr1:31298495-31298790
TAA
AGGGTCTGCTTTG

Secondary structure and sequence

TSD TIR

5'

3'

TA        C    ATT     ATTTGAGTTTATATCGTGGCATAAGTTTTGTGAGATTGTTTGGGAGAACTTATGAAAACAGCTTATGACAATTTTCAAAAGCTTTTTTCAACTTATTTTCATAAGTTCTCTAATATAGCTTATAAA
  AGGGTCTG TTTG   GACTT                                                                                                                              
  |||||||| ||||   |||||                                                                                                                              A
  TCCCGGAC AAAC   TATTT                                                                                                                              
AA        -    --C     TTCGAATAGACGTCGAATATCGTGTTCGCGAATACATATTCGAGTGTATTCGATAAAGATATCGTTTCCTATTTAATTTCAATTGAAAAAAAAATAAAAATAAAAAAACATATACAATATTCAACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050489

TAAGGGTCTGCTTTGATTGACTTATTTGAGTTTATATCGTGGCATAAGTTTTGTGAGATTGTTTGGGAGAACTTATGAAAACAGCTTATGACAATTTTCAAAAGCTTTTTTCAACTTATTTTCATAAGTTCTCTAATATAGCTTATAAAAACAACTTATAACATATACAAAAAAATAAAAATAAAAAAAAAGTTAACTTTAATTTATCCTTTGCTATAGAAATAGCTTATGTGAGCTTATACATAAGCGCTTGTGCTATAAGCTGCAGATAAGCTTTTTATCCAAACAGGCCCTAA

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