SE2020491

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5693
  • Medicago truncatula
  • SE2020491
  • Mutator
  • M8
  • MtChr1:16652942-16653448
  • TTAAATTAA
  • TAAATTAAGGGTTAAATATGTTTTTGATCCCTATAAATATGCCAACTTTTCGTTTTAGTCCCTCTAAAATTTTCCTTCAACTTTTAGTCCTTATAAAATTTTCAATCACTACTTTTGGTCCCTATTTTTAA

Secondary structure and sequence

TSD    TIR
5'



3'
T   A                      A              C        C                                                        AC              A       TTTAATTTTTTTAT       ATGAAATTGCGTAGAAATGTGTATAATATTCTAAAAAAAAATTAGAATTTTTTAACAAAACACAAATTAAATATGAATTTTTAACCGTAAAATATATAAAAATTCAT
 TAA TTAAGGGTTAAATATGTTTTTG TCCCTATAAATATG CAACTTTT GTTTTAGTCCCTCTAAAATTTTCCTTCAACTTTTAGTCCTTATAAAATTTTCAATC  TACTTTTGGTCCCT TTTTTAA              TTTTTTA                                                                                                           
 ||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||              |||||||                                                                                                            
 ATT AATTCCCAATTTATACAAAAAC AGGGATATTTATAC GTTGAAAA CAAAATCAGGGAGATTTTAAAAGGAAGTTGAAAATCAGGGATATTTTAAAAGTTAG  GTGAAAACCAGGGA GAAAATT              ATTTGAG                                                                                                           
A   A                      C              A        A                                                        AA              -       ------------TC       TATACATCTTAAGTATAAAAAATTAGTTTAAAAGGTCTTTTTAAGTTTTATAATGTTCTTAGTGAGGTTTTTTTTTAATATTAAAAAATTGTTTTGTACTTAAATTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End