SE2020495

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5697
  • Medicago truncatula
  • SE2020495
  • Mutator
  • M92
  • MtChr3:9431415-9431737
  • TAGAAATTA
  • TAGGCTAAACTTCATTTTTCGCCCTCTAAGTTTCAAAATGTTGCGATTTTGGCCCCCTATTAAAAAAAATGGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGAAAT           T                A                                              AAGTGAC   C      T  - GA  TATGCTCTTTTGACCTCCTAACATAAGGGAAATATGCTTTTTGACCCCTTATCTTTAC
       TAGGCTAAACT CATTTTTCGCCCTCTA GTTTCAAAATGTTGCGATTTTGGCCCCCTATTAAAAAAAATGGCAA       CCC TATGTT AG G  AA                                                          
       ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||| |||||| || |  ||                                                           
       ATCCGATTTGA GTGAAAAGCGGGGGAT CAAAGTTTTACAACGTTAAAACCGGGGGATAATTTTTTTTACCGTT       ACC GGGGAA AG A  GG                                                          
ATTAAAG           T                A                                              ----AAA   -      -  T --  GTTTTAACGACTCTTCTGCGGTGCACAGGGTTTTTTCCCCGGTATTAGCGTTGAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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