SE2020500

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5702
  • Medicago truncatula
  • SE2020500
  • Mutator
  • M115
  • MtChr3:27739693-27740015
  • TATATTATA
  • TATATTATAGGGTTAATACCTCAATAGCCCGTGTAATTTGGGCGAGGTCGGAAAATAGCCCCTGTAAAATAAAAACCACAGATTCCACCCCTGTAATTTTGGATTTTTCATATTTTACCCTCACCTTGTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
    T                   -      G           C      G        C                --C         CAC                  T          --  C    -  -----------TG    AAAAA   T       AGTCT
TATA TATAGGGTTAATACCTCAA TAGCCC TGTAATTTGGG GAGGTC GAAAATAG CCCTGTAAAATAAAAA   CACAGATTC   CCCTGTAATTTTGGATTT TCATATTTTA  CC TCAC CT             TTAA     TAT TGGGCTA     
|||| ||||||||||||||||||| |||||| ||||||||||| |||||| |||||||| ||||||||||||||||   |||||||||   |||||||||||||||||| ||||||||||  || |||| ||             ||||     ||| |||||||      
ATAT ATATCCCAATTATGGAGTT ATCGGG ACATTAAACCC CTCCGG CTTTTATC GGGACATTTTATTTTT   GTGTCTAAG   GGGACATTAAAACTTAAG AGTATAAAAT  GG AGTG GG             AATT     ATG ACTCGAT     
    T                   T      G           A      A        C                TTT         ATC                  C          TA  A    T  TAAAGGTCTGTAA    GGGAA   T       AAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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