Plant MITE

SE2020502

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5704
Medicago truncatula
SE2020502
Mutator
M104
MtChr5:30631339-30632112
ATATTTATA
ATATTTATAGAAGATTGCTTTTTAGGCCCCCCCAATATCTCTTTAGGCCCCCTAAAAGTACAAAAATAACCTTTATAATACATCCGGTAGTTACATACCGGTAGTGCATTTTAAATTTTCACATTTTACACCTTCGGTATGTACATACCAGAGGCACATTTACAAATTTTCGCGTTTATCGCATT

Secondary structure and sequence

TSD TIR

5'

3'

    TT   A                                                                                                                                            A                                   ------AT      TAAATGTACATGTTCTGCTATGTTGGAAAATTCACAAACTTTTGGTAGGGTGCATAAAATTTACAGAAATAAAAGGATCAAACTTTTCATTGAATATGACAGAACTCTAAAAAAATTATGCAGAAACAATACGAGAGAGGAAGAAGCAAGGTTTACCTTCTAAATGATTGCAATTGAGTAAAGATTGACAC
 ATA  TAT GAAGATTGCTTTTTAGGCCCCCCCAATATCTCTTTAGGCCCCCTAAAAGTACAAAAATAACCTTTATAATACATCCGGTAGTTACATACCGGTAGTGCATTTTAAATTTTCACATTTTACACCTTCGGTATGTACATACC GAGGCACATTTACAAATTTTCGCGTTTATCGCATT        GTTATT                                                                                                                                                                                               
 |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||                                                                                                                                                                                                
 TAT  ATA CTTCTAACGAAAAATCCGGGGGGGTTATAGAGAAATCCGGGGGATTTTTATGTTTTTATTGGAAATATTATGTAGGCCATCAATGTATGGCCATCACGTAAAATTTAAAAGTGTAAAATGTGGAAGCCATACATGTATGG CTCCGTGTAAATGTTTAAAAGTGCAAATAGCGTAA        TACAAG                                                                                                                                                                                               
A   TT   -                                                                                                                                            C                                   GCCATCAA      ACCTCCTTGTAAGTAAAACGCTAAAGAGTTAATGTGGAGGCCATATATATATGGCATGAGGTGGGTGCAACAATAGACTTATTTTACCACGTCAAAAAATTCTCAATAAAAGATTCGAAGTTATAACAAGGTATGGAACGCAAAAAACCGGTTAAAAACAACACAAAAGTAGTGTTAATTATCTTGTTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020502

ATATTTATAGAAGATTGCTTTTTAGGCCCCCCCAATATCTCTTTAGGCCCCCTAAAAGTACAAAAATAACCTTTATAATACATCCGGTAGTTACATACCGGTAGTGCATTTTAAATTTTCACATTTTACACCTTCGGTATGTACATACCAGAGGCACATTTACAAATTTTCGCGTTTATCGCATTATGTTATTTAAATGTACATGTTCTGCTATGTTGGAAAATTCACAAACTTTTGGTAGGGTGCATAAAATTTACAGAAATAAAAGGATCAAACTTTTCATTGAATATGACAGAACTCTAAAAAAATTATGCAGAAACAATACGAGAGAGGAAGAAGCAAGGTTTACCTTCTAAATGATTGCAATTGAGTAAAGATTGACACCATTTGTTCTATTAATTGTGATGAAAACACAACAAAAATTGGCCAAAAAACGCAAGGTATGGAACAATATTGAAGCTTAGAAAATAACTCTTAAAAAACTGCACCATTTTATTCAGATAACAACGTGGGTGGAGTACGGTATATATATACCGGAGGTGTAATTGAGAAATCGCAAAATGAATGTTCCTCCAGAACATAACTACCGAATGCGATAAACGTGAAAATTTGTAAATGTGCCTCCGGTATGTACATACCGAAGGTGTAAAATGTGAAAATTTAAAATGCACTACCGGTATGTAACTACCGGATGTATTATAAAGGTTATTTTTGTATTTTTAGGGGGCCTAAAGAGATATTGGGGGGGCCTAAAAAGCAATCTTCATATTTATA

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