Plant MITE

SE2020507

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5709
Medicago truncatula
SE2020507
Mutator
M9
MtChr2:6571734-6572074
TAAAATATA
TAGGCTTAATAGCAGTTTTAGCCCCCTAACTTTTCCAAAGTTGCGATTTTGACCCCCTAAGAAGA

Secondary structure and sequence

TSD TIR

5'

3'

TAAAATA            C      A   C          C A              A      A      TTTTTTT               -           TA                     T         -------------------GACT    CTACGCTGACATTGCAC
       TAGGCTTAATAG AGTTTT GCC CCTAACTTTT C AAGTTGCGATTTTG CCCCCT AGAAGA       TTACAAAACTGCCCC TAAGTTTTGCA  TGTGGCAGTTTTGGCCCTCAA GCTAATTTT                       CAGT                 
       |||||||||||| |||||| ||| |||||||||| | |||||||||||||| |||||| ||||||       ||||||||||||||| |||||||||||  ||||||||||||||||||||| |||||||||                       ||||                  
       ATCCGAATTGTC TCAAAA CGG GGATTGAAAG G TTCAACGCTAAAAT GGGGGA TTTTTT       GATGTTTTGACGGGG ATTCAAAACGT  ACATCGTCAAAACCGGGGGTT CGGTTAAAA                       TGTG                 
ATATAAA            A      G   T          T C              C      A      -----TT               G           TG                     T         ACCATTTTTTCTTATATTTTTTT    CACCGTGGAGTGAATCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020507

TAAAATATAGGCTTAATAGCAGTTTTAGCCCCCTAACTTTTCCAAAGTTGCGATTTTGACCCCCTAAGAAGATTTTTTTTTACAAAACTGCCCCTAAGTTTTGCATATGTGGCAGTTTTGGCCCTCAATGCTAATTTTGACTCAGTCTACGCTGACATTGCACCCTAAGTGAGGTGCCACGTGTTTTTTTTATATTCTTTTTTACCAAAAATTGGCTTTGGGGGCCAAAACTGCTACAGTTGCAAAACTTAGGGGGCAGTTTTGTAGTTTTTTTTAAGGGGGCTAAAATCGCAACTTCGTGAAAGTTAGGTGGCGAAAACTACTGTTAAGCCTAAAATATA

Copy Cancel