SE2020510

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5712
  • Medicago truncatula
  • SE2020510
  • Mutator
  • M53
  • MtChr4:10004374-10004776
  • TTGAAGAAA
  • TTGAAGAAAGGCTTCTATGGTACACCTAAAAATTTAAGTGTACCGGTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
      G   AAA                  -AA     TAA            ACCAAATC     ATTATTAATAAAATAAGTAGTTTTTTTTAAGAAAAAAAATTATTTTCTATCATCGACAATTATAATAATTCAATCTTATTTATCAAAAGCTTCGACAAAATAAAATTTATTTTTTTTGTATTTTTTATTACTCATAACAA
    TT AAG   GGCTTCTATGGTACACCT   AAATT   GTGTACCGGTAC        ATTAA                                                                                                                                            
    || |||   ||||||||||||||||||   |||||   ||||||||||||        |||||                                                                                                                                             
    AA TTC   TTGAAGATGCCATGTGGA   TTTAA   CACATGGCCATG        ATGAG                                                                                                                                            
AAAG  G   -CC                  GTG     CTC            -----AGA     GTATTTAAATATTTAATTGATGGTAAAATATTTTAAATTTCAACAAACTATTATAAATATAAAATCTTTTGTAGTAAAGTAACAAATATTCTTAATATAATTTAAAAATTGTTAAAAAGTATTTTATATTAGTTATAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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