Plant MITE

SE2020511

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5713
Medicago truncatula
SE2020511
Mutator
M46
MtChr2:11679172-11679371
TTAAAAAAA
AAGGGTTTGTCTAACATGTGCAATATTGCACATGTTAAGG

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAA        G    A         TA               TAACTA              TCA      ACCAACAATTATTG      AGCT
       AAGGGTTT TCTA CATGTGCAA  TTGCACATGTTAAGG      AAAGTAGTAATTTT   TTGAAA              ATTAAA    
       |||||||| |||| |||||||||  |||||||||||||||      ||||||||||||||   ||||||              ||||||    A
       TTCCCAAA AGAT GTACACGTT  AACGTGTACAATTCT      TTTCATCATTGAAA   AACTTT              TAATTT    
AAAAAAA        A    A         TA               -TCAAA              TTG      GAACACAAAAAATA      ATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020511

TTAAAAAAAGGGTTTGTCTAACATGTGCAATATTGCACATGTTAAGGTAACTAAAAGTAGTAATTTTTCATTGAAAACCAACAATTATTGATTAAAAGCTACATATTTAATATAAAAAACACAAGTTTCAAGTTAAAGTTACTACTTTAAACTTCTTAACATGTGCAAATTTGCACATGATAGAAAAACCCTTAAAAAAA

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