SE2020512

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5714
  • Medicago truncatula
  • SE2020512
  • Mutator
  • M39
  • MtChr5:19007414-19007795
  • AAAAATGAA
  • GGCTAAAATATGGTTTTAGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGGTAAAAAAAAAATTGTTTTTGGTCCCTGCAAAATTTTTTGTTTTTGAAAATAGTCCCTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAATGAAA                                                 G                  -                                                 -   TTATTTTCAAAAACAAAAAATTTTGCAAGGACCTTTTTTAAAAACAAAATATTTTGCAGG
          GGCTAAAATATGGTTTTAGTCCCTGCAAATATGCCTCGTTTTGGTTTTA TCCCTGGTAAAAAAAAAA TTGTTTTTGGTCCCTGCAAAATTTTTTGTTTTTGAAAATAGTCCCTGAG GGA                                                            
          ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||                                                            G
          CCGATTTTATACCAAAATCAGGGACGTTTATACGGAGCAAAACCAAAAT AGGGACCATTTTTTTTTT AACAAAAACCAGGGACGTTTTAAAAAACAAAAACTTTTATCAGGGACTG GGT                                                            
 AAAGTAAAA                                                 G                  T                                                 G   GAAAACACTACTAAACGTATGCACCGTGTAATATTGACTTGGTTAAAACATCAAAAACCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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