Plant MITE

SE2020517

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5719
Medicago truncatula
SE2020517
Mutator
M81
MtChr3:29088073-29088279
ATTATAAAA
TTATAAAAGAGCAATGCTATATCTCTAGAAAAATAACATAAGAAT

Secondary structure and sequence

TSD TIR

5'

3'

 A      AA   C    C   A              A   -      ----    CAAGAATAAAGAGCAGCCAATCACAATGCACTATTTACCACAATTTGAGGA
  TTATAA  GAG AATG TAT TCTCTAGAAAAATA CAT AAGAAT    TCTT                                                   
  ||||||  ||| |||| ||| |||||||||||||| ||| ||||||    ||||                                                    
  AATATT  CTT TTAC ATA AGAGATCTTTTTAT GTA TTCTTA    ATTC                                                   
AA      AC   -    A   A              C   G      AAAA    TTTAAAATTAACGTACTAAATAAACAAGTGAAGGATAAAAAGTCGGTGTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020517

ATTATAAAAGAGCAATGCTATATCTCTAGAAAAATAACATAAGAATTCTTCAAGAATAAAGAGCAGCCAATCACAATGCACTATTTACCACAATTTGAGGAAGTGTGGCTGAAAAATAGGAAGTGAACAAATAAATCATGCAATTAAAATTTCTTAAAAAATTCTTGATGCTATTTTTCTAGAGAAATAACATTTTCCATTATAAAA

Copy Cancel