Plant MITE

SE2010523

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5725
Medicago truncatula
SE2010523
Tc1/Mariner
St3
MtChr7:16770850-16771138
TA
TACTCCCTCCGTCCCTATATA

Secondary structure and sequence

TSD TIR

5'

3'

      C  C   CC      ----------CAA    T    ---- GACTAAAAATGTGTCCCTAAATAAAAATCAATTGTCAAATTACTAGATGCATTTATTATTTTTTTTCTTAAGAATACTCCTAATAAATACTATTAACTTGTCTT
TACTCC TC GTC  TATATA             GGAC CATT    T                                                                                                        
|||||| || |||  ||||||             |||| ||||    |                                                                                                         
ATGAGG AG CAG  ATATAT             ATAA AAAG    A                                                                                                        
      A  A   CA      ATTAGAAGAAAAC    -    TGTA AGAATTCTTTTCAACAATCACGTTGATTATACAGATAAAACACACAATTATAATGATTTAACAGGAAACAAACATACAGATAATTTTAACTGTAAAGTATAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010523

TACTCCCTCCGTCCCTATATACAAGGACTCATTTGACTAAAAATGTGTCCCTAAATAAAAATCAATTGTCAAATTACTAGATGCATTTATTATTTTTTTTCTTAAGAATACTCCTAATAAATACTATTAACTTGTCTTGAAATATGAAATGTCAATTTTAATAGACATACAAACAAAGGACAATTTAGTAATATTAACACACAAAATAGACATATTAGTTGCACTAACAACTTTTCTTAAGAAATGTGAAAAATACAAAAGAAGATTATATATAACGACAGAAGGAGTA

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