SE2030526

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5728
  • Medicago truncatula
  • SE2030526
  • hAT
  • Hat14
  • MtChr2:27615274-27615810
  • TTCACAAG
  • AGCTATGAAGCACGGACTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCACA                 T  GCACGACACTGAC   TCGACACCGCTAATGTAAAAAATATAGGACACCGACACCGCTATCTATATATTAATTTATTTATAAAATATCTAAATTGAGAATCAAAATACATACATATGAATCTAACTTGAGCACTTTATTTCATTAAAAAAAGGTCTATAACAATATTTGGCTTTTATTATCCATTTATTATTGAAAAATTAAAAAACATTGTAATCAACTTTAATGTCCAGAATGCCTCGTTGCTCAA
      AGCTATGAAGCACGGAC CC             ACA                                                                                                                                                                                                                                        
      ||||||||||||||||| ||             |||                                                                                                                                                                                                                                        C
      TTGATACTTCGTGCCTG GG             GAT                                                                                                                                                                                                                                        
GAACAC                 T  ------------A   CTTAATCCGCACAGCGCCACAGTCTGTGCGCAGCCACAGGCTGTGAGGATACTGTGCATAGCTTGTTCACAGGATTTATTCAATAAAAGAAAAAATAAAGCTGTGAGGAACCTGACCACAGGCTGTGGATATATTGTGAATATACTCCGCACAGCCTGTTGAGTTTGTTTACAGACTTAAAAAAAGAGACGAAGGTGTATCATCTAAGTTCTTAATTTCTACACACTCTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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