SE2020527

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5729
  • Medicago truncatula
  • SE2020527
  • Mutator
  • M4
  • MtChr2:23451572-23451967
  • AAGATTCAA
  • GATTCAAGGGTTAATAGTGCTTTATCCCCCAGTAATATAGGTCATTTCCGGTTTTCGCCCCTGTAAAATATTTTTTTTGAATTTCATCCTTGAAATTTGAAGATTTTTTGGTTTTGGACCTTCATGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
AA  T  AA            C          A                C       CG                      A     A      A               T                   AAATTTCACCCC   T  TTTGAGCAAATATAGGTTTACCCCCCTTATAATTTGAGAAAAGTTCGGTTTAAACCC
  GA TC  GGGTTAATAGTG TTTATCCCCC GTAATATAGGTCATTT CGGTTTT  CCCCTGTAAAATATTTTTTTTG ATTTC TCCTTG AATTTGAAGATTTTT GGTTTTGGACCTTCATGGA            CTG AA                                                         
  || ||  |||||||||||| |||||||||| |||||||||||||||| |||||||  |||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||||||||||||||            ||| ||                                                          
  CT AG  CCCAATTATCAC AAATGGGGGG CATTATATCCAGTAAA GCCAAAA  GGGGACATTTTATAAAAAAAAC TAAAG AGGAAC TTAAACTTCTAAAAA CCAAAACCTGGAAGTACTT            AAA AC                                                         
AA  T  AA            A          A                A       TG                      C     C      A               -                   ------------   -  TGTCATGTTTTACTTTCTATACCGTCCCCCATTTGGCTTTAAACGAGTTTAATTGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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