SE2020533

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5735
  • Medicago truncatula
  • SE2020533
  • Mutator
  • M12
  • MtChr1:10943049-10943321
  • GCTCTTTCC
  • CGGTTGCGGTTATGGTGCATAAGGATTTCCTTATGCACCCTGCATAAATTTAGAAATGGTTTCTGTGAGTTGTACTCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GCTCTTTC   T       A             TT                                   C  T    TGT    -  -          ATGTACTTAATGGTTTCCAGCACCCTGCATAAATTATAG
        CGG TGCGGTT TGGTGCATAAGGA  TCCTTATGCACCCTGCATAAATTTAGAAATGGTTT TG GAGT   ACTC CA AAACCATTAG                                       
        ||| ||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||| || ||||   |||| || ||||||||||                                       T
        GCC ACGCCAA ATCACGTATTCCT  AGGAATACGTGGGACGTATTTAGGTCTTTACCAAA AC CTCA   TGAG GT TTTGGTAAAG                                       
CCTTTCTC   C       C             TT                                   -  -    TAT    T  C          GTTCCGTTTTACCAAAACCGTATTAAAATATGTTTAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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