SE2020534

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5736
  • Medicago truncatula
  • SE2020534
  • Mutator
  • M53
  • MtChr5:13519513-13519926
  • GTATAAGAA
  • GGGAACTTCTACATTACACTCG

Secondary structure and sequence

TSD    TIR
5'



3'
GTATAAGAA  G  C      AT        TAAATTG  -        T   -  TT    CCT    C    AATT  C  TCAA    A    AT   TA       GTCGG       ---------A   -      ACATCATTTCATAAGAAAAACACATCATTCATTGTTTATAAGAGTCATGGTAAAATTTTAACATATTATCG
         GG AA TTCTAC  TACACTCG       TG GTGTACCG TAC TC  ACTT   AAAT TATA    AA GA    TTTT TGAA  AAA  GTTATTT     CATTTAT          TCT TAGAAA                                                                       
         || || ||||||  ||||||||       || |||||||| ||| ||  ||||   |||| ||||    || ||    |||| ||||  |||  |||||||     |||||||          ||| ||||||                                                                       T
         CC TT AAGATG  ATGTGAGT       AC CACATGGC ATG AG  TGGA   TTTA ATAT    TT CT    AAAA ACTT  TTT  TAATAAA     GTAAATA          TAA TTAGAA                                                                       
AAGAATATG  G  T      GC        TGTATAA  T        C   T  TT    -AT    A    CAAT  A  CAAC    A    CT   TA       AAATA       CTAATATTAC   T      TAAGTCGTTTTTGCAGTCGCTTTATTTTAACTTAAAAAAAGCGTATATTATCTCTTGAAACTGATAAAACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End