SE2050536

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5738
  • Medicago truncatula
  • SE2050536
  • PIF/harbinger
  • To11
  • MtChr6:7698593-7698839
  • TAA
  • AGGGTGTGTTTGGATTGAGGGTTTAGGAGGGGAAGGGAGGGGAGGGTTTGTTTTTCTTTTTTAAATTACGGACTAGATAATGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               T                                  TT    T           --C G    GAT       CTCTAAAATAAATTAA        GAA   TTATAT
  AGGGTGTGTTTGGAT GAGGGTTTAGGAGGGGAAGGGAGGGGAGGGTTTG  TTTC TTTTTAAATTA   G ACTA   AATGTTT                GTGTGAAT   GTA      
  ||||||||||||||| ||||||||||||||||||||||||||||||||||  |||| |||||||||||   | ||||   |||||||                ||||||||   |||      T
  TCCCACACAAACCTA CTCCCAAATCCTCCCCTTCCTTTCCCTCCCAAAT  AAAG AAAAATTTAAT   T TGAT   TTATAAA                TATACTTG   TAT      
AA               C                                  CT    T           ACT G    ATT       --AAACTTCTCAATTG        TAC   TTACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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