SE2020538

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5740
  • Medicago truncatula
  • SE2020538
  • Mutator
  • M117
  • MtChr3:1867620-1868017
  • CAAAATCTA
  • GAGAATTGCTGTTCCCACATGTTTGGTTGTGCCACACGAGTAAAATACGAAAATGCCTTTCGGCAGTTTGCTACCGAAGTTTTTAGGAAACCGGCGGCAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAATCTA                      ---T                    AA    A             C   TT   A                                       AAAAACCTCGGTAGTTAATATGAACTTAAACAATTTCGGTAGTTAACTACCGAAGAAAACTGCCGAAGAAAACCTC
         GAGAATTGCTGTTCCCACATGT    TGGTTGTGCCACACGAGTAA  TACG AAATGCCTTTCGG AGT  GCT CCGAAGTTTTTAGGAAACCGGCGGCAGTTAACTGCCGAG                                                                            
         ||||||||||||||||||||||    ||||||||||||||||||||  |||| ||||||||||||| |||  ||| |||||||||||||||||||||||||||||||||||||||                                                                            G
         CTCTTAACGACAAGGGTGTATA    ACCGACACGGTGTGCTCATT  ATGC TTTACGGGAAGCC TCA  TGA GGCTTCAAAAATCCTTTGGCCGCCGTCAATTGACGGCTC                                                                            
ATCTAAAAC                      CCAT                    CA    C             A   TT   C                                       CTTTTGAGTTGTATTGGTCTTGGGTCTTGGTGTCCATCAAAAATCTTACTACTTCTAAAGGAGCCGTCAATTGATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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