SE2020540

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5742
  • Medicago truncatula
  • SE2020540
  • Mutator
  • M24
  • MtChr3:26613785-26614087
  • TACTTTGGT
  • ACTTTGGTGGGTTAATAGTGTTTTTCACCCCTGTAATATATGTCATTTTCGGTTTTTGCCCCTATAAAATTTTCGGTTTGATTTGCACCATCATAAAAATTTTATTTTTCGGAAAACACCCTTAATAGACCATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
T   TT   -                                                                                 A  A     A                             A  --A    -----AAAA    AAT
 ACT  GGT GGGTTAATAGTGTTTTTCACCCCTGTAATATATGTCATTTTCGGTTTTTGCCCCTATAAAATTTTCGGTTTGATTTGCACC TC TAAAA TTTTATTTTTCGGAAAACACCCTTAATAG CC   TTCA         TCAA   
 |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||   ||||         ||||    
 TGG  TCA CCCAATTATCACGAAAAGTGGGGACATTATATACAGTAAAGGCCAAAAGCGGGGATATTTTAAAAGCCAAACTAAACGTGG AG ATTTT AAAATAAAAGGTCTTTTGTGGGGATTATC GG   AAGT         AGTT   
    TT   T                                                                                 G  C     A                             C  AAA    CTTAAAAAA    CTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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