SE2010543

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5745
  • Medicago truncatula
  • SE2010543
  • Tc1/Mariner
  • St14
  • MtChr3:10239240-10239536
  • TA
  • TACTACCTCCGTCCCTAATTATAGGACCCTTTTGAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                        --TAACGGG   TA  ----   GTGGATATTTGTATTAAATATGTTTGTAATTACTATTGTTTTTACAATTTTATCCTTTAAGAGAGAGTTGGTTTATGTTTTCAACGTGT
TACTACCTCCGTCCCTAATTATAGGACCCTTTTGAAAAAA         AAT  AG    ATA                                                                                         
||||||||||||||||||||||||||||||||||||||||         |||  ||    |||                                                                                         T
ATGATGGAGGCAGGGATTAATATTCTGGGAAAACTTTTTT         GGA  AA    TTC                                                                                         
                                        TTTTAACAG   --  AATA   TGGGGAAACGATAAAGGTTGATGTAATTAATAAAGAAATGTATGTACGGGGATAAATAATATGTAGAAAAAGAAGTTAGTTGTTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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