Plant MITE

SE2020546

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5748
Medicago truncatula
SE2020546
Mutator
M118
MtChr7:31607084-31607862
CAATCTATG
TGGG

Secondary structure and sequence

TSD TIR

5'

3'

CAATCTA    GTGC      C         --GCA             T        ---CCCA   CATTAACCGGTAGCCCAACATAATTGCTTCGTACACCCCAACCCATTTTGTCATACACCCCCAAGCGAAACCACAATTTCGTTTCTTCATCTTCTCCGGCACGATACCGTATTTTCATTAATTAATGGCCAATTTATTTCTGCAATTCACGTGTTCACTTTACTGATATGTGGTTATGGCAACACATATATGCACAAATCTTTAATTTTCGGATTAAGCTTTTAGCAAAACAATATATACATATGCTTAACTTGGTAACCGTCAACATTTGCATAACAATCCAGTGTCCACGACGACACCGACACGAACACATCAAATGAGGAA
       TGGG    AGTTAT ATGCATAAG     TCCTTATGCACCC GCATAAAT       ACC                                                                                                                                                                                                                                                                                                                                    
       ||||    |||||| |||||||||     ||||||||||||| ||||||||       |||                                                                                                                                                                                                                                                                                                                                     
       ACCC    TCAATA TACGTATTC     AGGAATACGTGGG CGTATTTG       TTT                                                                                                                                                                                                                                                                                                                                    
GTATCTA    GTTT      A         AATAA             T        TGAAATG   TGGTAATCTGATAATAAAACCAAAGAGTATTTTCTGATAGTTTTGGTAATTTGGTATTAATACCAAAGTTATTATTAAAGTCACATATTGTAGAATTAGTAATAAATTTTGGTACATTGTTATTATTAAAGTAATTTTTAGTAATGTGTTAATAGAACCAAAGTGTATGTTCTGATAGTTTTGGTAATTTGGTATGAATACCAAAGTCATTAGGTATGGGACTTCAAACAAAGTTAAGTCGTTGTTGGGAAAGACGTTTAGTTCACATAGCATACTGCTGCTACCTTTTACTTTTAACTACACCACACAACAACAACAACTCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020546

CAATCTATGGGGTGCAGTTATCATGCATAAGGCATCCTTATGCACCCTGCATAAATCCCAACCCATTAACCGGTAGCCCAACATAATTGCTTCGTACACCCCAACCCATTTTGTCATACACCCCCAAGCGAAACCACAATTTCGTTTCTTCATCTTCTCCGGCACGATACCGTATTTTCATTAATTAATGGCCAATTTATTTCTGCAATTCACGTGTTCACTTTACTGATATGTGGTTATGGCAACACATATATGCACAAATCTTTAATTTTCGGATTAAGCTTTTAGCAAAACAATATATACATATGCTTAACTTGGTAACCGTCAACATTTGCATAACAATCCAGTGTCCACGACGACACCGACACGAACACATCAAATGAGGAACACTCAACAACAACAACACACCACATCAATTTTCATTTTCCATCGTCGTCATACGATACACTTGATTTGCAGAAAGGGTTGTTGCTGAATTGAAACAAACTTCAGGGTATGGATTACTGAAACCATAAGTATGGTTTAATGGTTTTGATAGTCTTGTATGTGAAACCAAGATAATTGTGTAATGATTTTTAATGAAATTATTATTGTTACATGGTTTTAAATAATGATTAAGATGTTATACACTGAAATTATTATTGAAACCATAATTATGGTTTAATGGTTTTGATAGTCTTTTATGAGAAACCAAAATAATAGTCTAATGGTTTTGTAAAGTGTTTATGCTGGGTGCATAAGGAAATAACTTATGCATAATAACTTTTGCCCAATCTATG

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