SE2020555

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5757
  • Medicago truncatula
  • SE2020555
  • Mutator
  • M30
  • MtChr7:15642051-15642435
  • TTATTTTTT
  • GGCTTAAATGCTCTTTTGGTCCCTTAAATATTTATTTGGTATCGCTTTGGTCCTATAAGTAATAAAAGGTTTGTTTAGGTCCCTTAACTTTATTTAAAGTATCGGTTTGATCTTTATGTTAATTTAATTCAAAAAAACGTTAAGTTTAGGGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTTTTT                           A                                                A                 T              A     -A                               A  GA  AAACTAATAC      -AATA    AAGG
         GGCTTAAATGCTCTTTTGGTCCCTTAA TATTTATTTGGTATCGCTTTGGTCCTATAAGTAATAAAAGGTTTGTTT GGTCCCTTAACTTTATT AAAGTATCGGTTTG TCTTT  TGTTAATTTAATTCAAAAAAACGTTAAGTTT GG  CC          TAATTA     AGTT    
         ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||| ||  ||          ||||||     ||||    G
         CCGAATTTACGAGAAAACCAGGGAATT ATAAATAAGTCATAGCGAAACCAGGGTATTCATTATTTTCCAGGCAAA CCAGGGAATTGAAATAA TTTCATAGCCAAAC AGGAA  ACAATTAAATTAAGTTTTTTTGCAATTTAAA CT  GG          ATTAAT     TCAA    
TTTTTTATT                           C                                                A                 C              C     AG                               A  AG  AATAGAATAA      CATAA    ACCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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