SE2050558

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5760
  • Medicago truncatula
  • SE2050558
  • PIF/harbinger
  • To20
  • MtChr4:20995326-20996034
  • TAA
  • AGGGTGTATTGAATTAGGATTTTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAGG           A    G        ATGAT       GTTTAAAAAAGTTTTGAAGATTTTAAAAGACTTAGCATAATTTTGATGACTTTAATTATTTTAAAAGACTATTAAAGATTTCAATAGATTTAATTCATAAGGTTTTAAAGGATTTAAAATGATTTTATGGATTTCAAGAGACTTCAGCAGATTTTATGAATATTAATAAATAATTGAAAAAAAAAATCATAACACACTCTCTTTCACAAAATCTCAATAAAGATTTTTTTATTTTTTTATGTTATTTTTATTTTTTACGGGAGAGAGAGGAAAAGAGAGAGTAATAGAGAAGGGAGGAGAGAGGGAGAGATATTA
     AGGGTGTATTG ATTA GATTTTAA     AATTTTT                                                                                                                                                                                                                                                                                                                           
     ||||||||||| |||| ||||||||     |||||||                                                                                                                                                                                                                                                                                                                           A
     TCCCATATAAC TAGT CTAAAATT     TTAAAAT                                                                                                                                                                                                                                                                                                                           
   AA           C    A        ---CC       TTTCTGACAAAATATTACTTTTTTAAAACACTATAAGTTATTACTCTAAGAAAAGTTAAATTTTTTTTAAAACGTAACAAGTTAGTTTTAAAAAACAGTAAATTTTTTCAGTTTTTTTCAGAACAATATTAGTTAGTTCTAAGAATTAGTGAATGTTTTTTCAAATCACCATAAGTTTTAGTAAGTTTAAAACTTTCTAATAAATTATTTAGTCTAAAACTACTTAAAACACCTTAAAAGATCACTTTAAAACCGTACTTTTTCAGAAAGTACTTTTGTATTATAAACAATTCTAACAAAAAAAGAAAATTCTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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