SE2020559

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5761
  • Medicago truncatula
  • SE2020559
  • Mutator
  • M92
  • MtChr6:19171399-19171720
  • AAATTATTT
  • AAATTATTTGGCTAAACCTCACTTTTCGCCCTCTAAGTTTCAAAATGTTGCAATTTTGACCCCCTATTAAAAAAAATGGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
    T           CCT                A               A      A                A      -AA   A -      TGTTTAGGGAAATATGCTCTTTTGACCTCCTAACATAAGGGAAATATGTTTTTTGACCTCTTATCT
AAAT ATTTGGCTAAA   CACTTTTCGCCCTCTA GTTTCAAAATGTTGC ATTTTG CCCCCTATTAAAAAAA TGGCAA   GTG C CTCCTA                                                                  
|||| |||||||||||   |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||   ||| | ||||||                                                                   
TTTA TAAACCGATTT   GTGAAAAGCGGGGGAT CAAAGTTTTACAACG TAAAAC GGGGGATAATTTTTTT ACCGTT   ACC G GGGAAG                                                                  
    T           CAC                A               C      C                -      AAA   - G      TAGGGTTTTAACTACTCTTCTGCGGTGCACAGGGTTTTTTCTCCGGTATTAACGTTGAAAAACATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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