Plant MITE

SE2020560

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5762
Medicago truncatula
SE2020560
Mutator
M2
MtChr8:36794805-36795006
TAATTTTAA
AGAGCAATGATATTTGTACATTCATTT

Secondary structure and sequence

TSD TIR

5'

3'

TAATTTTA    C               T      AATG        GG          GA     ------   -  - TTGATTGGTCAAAAACAATGGAGAG
        AGAG AATGATATTTGTACA TCATTT    ACAACTTT  TGACAACTTT  TTTTC      TCT CT T                         
        |||| ||||||||||||||| ||||||    ||||||||  ||||||||||  |||||      ||| || |                         A
        TCTC TTACTATAAACATGT GGTAAA    TGTTGAAA  ACTGTTGAAA  GAGAG      TGT CT C                         
AATTTTAA    T               T      ACGA        -A          GA     TATGAG   A  A AACAATAGGAGAGACAAGGAAAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020560

TAATTTTAAGAGCAATGATATTTGTACATTCATTTAATGACAACTTTGGTGACAACTTTGATTTTCTCTCTTTTGATTGGTCAAAAACAATGGAGAGAGAAAAAGGAACAGAGAGGATAACAACATCATGTGAGTATGAGAGAGAAAGTTGTCAAAAAGTTGTAGCAAAATGGTTGTACAAATATCATTTCTCTAATTTTAA

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