Plant MITE

SE2020562

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5764
Medicago truncatula
SE2020562
Mutator
M85
MtChr1:17381935-17382190
ATGTCTATA
ATGTCTATAGAATTATGCTCTTTACCCAATACATTTTGCTCGGGCCCAACTGAATTACCGAAAATACCCTTGCGTGAGTTAACTCACGCATGTGTTAAATTATGCG

Secondary structure and sequence

TSD TIR

5'

3'

    TC   A     A        A         TTT      G             AC G      C                   C   T       A  AT   CAAC           TGAAATT
 ATG  TAT GAATT TGCTCTTT CCCAATACA   TGCTCG GCCCAACTGAATT  C AAAATA CCTTGCGTGAGTTAACTCA GCA GTGTTAA TT  GCG    TTAACTCACGC       
 |||  ||| ||||| |||||||| |||||||||   |||||| |||||||||||||  | |||||| ||||||||||||||||||| ||| ||||||| ||  |||    |||||||||||        
 TAC  GTA CTTAA ACGAGAAG GGGTTGTGT   GTGAGC CGGGTTGACTTGA  G TTTTAT GGGACGCACTCAATTGAGT CGT CACAGTT AG  CGC    AATTGAGTGCG       
A   CT   -     G        A         TTT      G             AA G      A                   A   T       A  GT   ACTC           TTCACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020562

ATGTCTATAGAATTATGCTCTTTACCCAATACATTTTGCTCGGGCCCAACTGAATTACCGAAAATACCCTTGCGTGAGTTAACTCACGCATGTGTTAAATTATGCGCAACTTAACTCACGCTGAAATTAACACTTGCGTGAGTTAACTCACGCTGGAATTGACACTTGCATGAGTTAACTCACGCAGGGATATTTTGGAAAGTTCAGTTGGGCGCGAGTGTTTTGTGTTGGGAGAAGAGCAGAATTCATGTCCATA

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