Plant MITE

SE2020564

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5766
Medicago truncatula
SE2020564
Mutator
M123
MtChr8:36439219-36439435
TAAACTTAA
AGGGTCTTGCTAACCATTGCCCTGAGGGCAT

Secondary structure and sequence

TSD TIR

5'

3'

TAAACTTA    TCT                GA         -  TGAGGGCAATGGTTAAGGAAGCCAAAAGTAGCATGTTTGCATTGTTTTTAACAACATTTTGACT
        AGGG   TGCTAACCATTGCCCT  GGGCATTGC CC                                                                
        ||||   ||||||||||||||||  ||||||||| ||                                                                 
        TCCT   ACGATTGGTAACGGGA  CCCGTAACC AT                                                                
AATTCAAA    CTT                AC         T  TCCCCTATTTTTATCTTTATATCGTAACCTTTTACCACTTTTTACTATTTAAATTGAAAAATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020564

TAAACTTAAGGGTCTTGCTAACCATTGCCCTGAGGGCATTGCCCTGAGGGCAATGGTTAAGGAAGCCAAAAGTAGCATGTTTGCATTGTTTTTAACAACATTTTGACTTTTAAAAAGTTAAATTTATCATTTTTCACCATTTTCCAATGCTATATTTCTATTTTTATCCCCTTATCCAATGCCCCAAGGGCAATGGTTAGCATTCTCCTAAACTTAA

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