Plant MITE

SE2020565

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5767
Medicago truncatula
SE2020565
Mutator
M113
MtChr8:18671451-18671642
TTTAAATTA
AGGGTCTTGTTAACGAGTGCCCCTGTGGCACTCTTTAAGCATGCTAAATTAG

Secondary structure and sequence

TSD TIR

5'

3'

TTTAAATT    TCT             C    T             C TG     T   -  -  TTATTCTTTAAAAAAGTCAAACAATTCAATT
        AGGG   TGTTAACGAGTGC CCTG GGCACTCTTTAAG A  CTAAA TAG GA AG                               
        ||||   ||||||||||||| |||| ||||||||||||| |  ||||| ||| || ||                               T
        TCCC   ACAATTGCTCACG GGGC CCGTGAGAAATTC T  GATTT ATC TT AA                               
ATTAAATT    TTT             A    C             - CG     T   A  G  AAATACTTTTGAACACATAAATTATGTAACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020565

TTTAAATTAGGGTCTTGTTAACGAGTGCCCCTGTGGCACTCTTTAAGCATGCTAAATTAGGAAGTTATTCTTTAAAAAAGTCAAACAATTCAATTTCCAATGTATTAAATACACAAGTTTTCATAAAAAGTTACTATTTTAGGCTCTTAAAGAGTGCCCCGGGAGCACTCGTTAACATTTCCCTTTAAATTA

Copy Cancel