Plant MITE

SE2010566

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5768
Medicago truncatula
SE2010566
Tc1/Mariner
St3
MtChr1:31549767-31550051
TA
TACTCCCTCCGTCCCTATATCTAAGCACCTTTTGAATTT

Secondary structure and sequence

TSD TIR

5'

3'

                              -     A   TTCACAT        GAA     ---------------    - T  A   AATGTGTCTATTTTGTGTGTTATTACCAAATTGTCATTTGTTTGTATGTGTATTAAATTTG
TACTCCCTCCGTCCCTATATCTAAGCACCT TTTGA TTT       TTCTTAAA   GAATT               GTTA A GC ATT                                                             
|||||||||||||||||||||||||||||| ||||| |||       ||||||||   |||||               |||| | || |||                                                              
ATGAGGGAGGTAGGGATATAGATTTGTGGG AAACT AAA       AGGGATTT   TTTGG               TCTA G TA AAT                                                             
                              T     G   TTAAAAC        ACA     GGAAAAATTTAATGA    C -  -   AATAAAAAAGGATTTGTATGGGAATTAATTTTGATGATTGAACAGAACTTTATACTTTTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010566

TACTCCCTCCGTCCCTATATCTAAGCACCTTTTGAATTTTTCACATTTCTTAAAGAAGAATTGTTAATGCAATTAATGTGTCTATTTTGTGTGTTATTACCAAATTGTCATTTGTTTGTATGTGTATTAAATTTGACTTTTCATATTTCAAGACAAGTTAGTAGTTTTAATTAAGGGTATGTTTAGGAAAAAATAATAAATGCATCTAGTAATTTAAAAAGGGGTTTACATTTAGGGACAAAATTAAAGTCAAATGGGTGTTTAGATATAGGGATGGAGGGAGTA

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