Plant MITE

SE2030567

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5769
Medicago truncatula
SE2030567
hAT
Hat38
MtChr3:20452510-20452908
TCTATATT
TATATTCAGTGGCGGAGCC

Secondary structure and sequence

TSD TIR

5'

3'

TC    TT             AGAAAAAAAT  CA           TAAAATTA   A   -  AAATTGTTTAAAGTCTCGCAAATTAGACCTATAATTGAATTATTTAAATTTTTCGGATGGGCCACTACACCAATTTGCGGGAATTTGGATCAACCGAAACCTAAAACCGACATAAAATCGTATAAAATCTCGCAAAATAG
  TATA  CAGTGGCGGAGCC          GT  GGGTGGGCCAC        ACT TTG AA                                                                                                                                            
  ||||  |||||||||||||          ||  |||||||||||        ||| ||| ||                                                                                                                                             
  ATAT  GTCACCGCCTCGG          CG  CCCACCCGGTG        GGT GGG CT                                                                                                                                            
TT    CT             --GAAGTACC  AC           -----CCG   -   C  TTTTAATTTTTTAGTTGCTAATATCCAGATAAAACGCTCTAAAATACGTTAAAACACAGCCAAAATACAAAACCAACTAGATTTAAGGACGTTTCACCACATCACCGGGTAGGCTTTTAAATTTATTAAGTTAATATCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030567

TCTATATTCAGTGGCGGAGCCAGAAAAAAATGTCAGGGTGGGCCACTAAAATTAACTATTGAAAAATTGTTTAAAGTCTCGCAAATTAGACCTATAATTGAATTATTTAAATTTTTCGGATGGGCCACTACACCAATTTGCGGGAATTTGGATCAACCGAAACCTAAAACCGACATAAAATCGTATAAAATCTCGCAAAATAGACCTATAATTGAATTATTTAAATTTTCGGATGGGCCACTACACCACTTTGCAGGAATTTAGATCAACCAAAACATAAAACCGACACAAAATTGCATAAAATCTCGCAAAATAGACCTATAATCGTTGATTTTTTAATTTTTCCGGGTGGGCCGTGGCCCACCCCAGCCCATGAAGGGCTCCGCCACTGTCTATATT

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