SE2020568

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5770
  • Medicago truncatula
  • SE2020568
  • Mutator
  • M42
  • MtChr3:41877850-41878052
  • TTAAACTAA
  • TAAGGGAAATGTTAACTTGTGCCCTTAAGGCACAAGTTAATGAGTCAAAAGTAGAAATATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAC      AA                   A      A     TG    -       --    T    GGTTGTAATCAA         AT      TTTTT
      TAAGGG  ATGTTAACTTGTGCCCTTA GGCACA GTTAA  AGTC AAAAGTA  GAAA ATTT            TGCATTTGA  TTAATT     
      ||||||  ||||||||||||||||||| |||||| |||||  |||| |||||||  |||| ||||            |||||||||  ||||||      
      ATTCCC  TACGATTGAACACGGGAAT CCGTGT TAATT  TTGG TTTTCAT  TTTT TAAG            ACGTAAGTT  AATTAA     
AATCAA      AG                   C      G     CG    A       AT    T    --AATTTAAAAC         --      TTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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