SE2030571

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5773
  • Medicago truncatula
  • SE2030571
  • hAT
  • Hat39
  • MtChr5:11288997-11289642
  • ATTGAGGT
  • ATTGAGGTTAGGAGTGAGAATAGGCTAGGCC

Secondary structure and sequence

TSD    TIR
5'



3'
   GA       A   A     G          G   ----    - TGTAAGGCCTGAGTCTGGCTTGCCAAATTTTTTGCAGTCCTAGGCCTGACCTACGGCTTGTAATAGGTTTACATTTTAGGTTTGAGCATGACCTTATATGAAAGCTGATATGGCCTGCTAGCCTGATTAAAAACATATTTCTTATGAACATTTTTAAATAAGCATTGTGATCTAAGTTTAAATAGATTAGCGAATTTATATATCAATTAGATTAAACTATCTTTTGATAATCAACATGAGTTTTTAGGAAATTTGAATATATATTGTATCATATTTCAA
ATT  GGTTAGG GTG GAATA GCTAGGCCGA TTA    GGCT T                                                                                                                                                                                                                                                                                       
|||  ||||||| ||| ||||| |||||||||| |||    |||| |                                                                                                                                                                                                                                                                                       T
TGG  TTAATCC TAC CTTAT CGGTCCGGCC GGA    CTGG A                                                                                                                                                                                                                                                                                       
   AG       C   -     A          -   TGTC    G TGATGGATCGGATACTGTCCCGTTTGGTCTAAAAAAAAGAATTTGTCTTTTCTATATTCGAAACAATCTTCGGATAAATCGAATTTTCCAGTCCGGTGTACGGTAAGTTTTTCGGAAAATGCGGATAATCCGGCCGGATAAATTCATTTATATTATTATAATAATATAATATAAAACATAAACTTAATTTTATTTTTAAACAATTGAAAAACTCATTAAATTCAAATAATCATACGTAATCAAAAAAAACGTATAAATTTGCATAATAATATTTGTTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End