Plant MITE

SE2020572

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5774
Medicago truncatula
SE2020572
Mutator
M39
AC235009:26566-26949
TTTAAAATA
TTTAAAATAGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGCAAAA

Secondary structure and sequence

TSD TIR

5'

3'

        AAT                                                              -TTTT                         A    T  TTT   TTTT    CCTGGCTCCACTTTTGCGATAATTTGCACATGTGTCACATGATGACTTAACTATTTATTAGAGAAATAGTCCCTG
   TTTAA   AGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGCAAAA     TTTGTTGTTTTTGGTCCCTGCAAAT TGTC CA   TGG    GGTC                                                                           
   |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| |||| ||   |||    ||||                                                                            
   AAATT   TCCGATTTTATACCAAAACCAGGGACGTTTATACGGAGCAAAACCAAAATCAGGGACGTTTT     AAACAACAAAAACCAGGGACGTTTT ATAA AA   CAA    AAAC                                                                           
ATA     ---                                                              TTTTT                         -    -  ---   ----    CTTTATCAGGGACGTCCCTGATAAAGGTTTTTGTTTTATAAAACGTCCCTGGAAAAAGTTTTAGTTTTCTAAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020572

TTTAAAATAGGCTAAAATATGGTTTTGGTCCCTGCAAATATGCCTCGTTTTGGTTTTAGTCCCTGCAAAATTTTTTTGTTGTTTTTGGTCCCTGCAAATATGTCTCATTTTGGTTTTGGTCCCTGGCTCCACTTTTGCGATAATTTGCACATGTGTCACATGATGACTTAACTATTTATTAGAGAAATAGTCCCTGCAAAATCTTTTGATTTTGAAAAAGGTCCCTGCAAAATATTTTGTTTTTGGAAATAGTCCCTGCAGGGACTATTTCCAAAAACAAAATATTTTGCAGGGACCAAAAACAACAAATTTTTTTTTGCAGGGACTAAAACCAAAACGAGGCATATTTGCAGGGACCAAAACCATATTTTAGCCTTTAAAATA

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