SE2020574

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5776
  • Medicago truncatula
  • SE2020574
  • Mutator
  • M88
  • MtChr2:31962133-31962620
  • ATTAAATAT
  • ATGAGTAAATAGTCAATTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTAAAT                    TCCCC                      TACTTCCC   A   AACAAAACTTCAATTACCCCCCTGAAATTTCACAACATTAGTCAATTTACCCCCTCCGTCAAATTTTTCTGTTAGTGAACATGACGTTTTGCAAAACTATTATTGTCACTTTAAAAATACACATTTTTCCCTATTTTGATGTATATATGTATGTAGTTTTTCCAAACTCCAAAATTAATAG
       ATGAGTAAATAGTCAATTTC     TGAAATTGTAAGTTTCATCAAT        GGA TTT                                                                                                                                                                                     
       ||||||||||||||||||||     ||||||||||||||||||||||        ||| |||                                                                                                                                                                                     T
       TACTCATTTATCAGTTAAAG     ACTTTAACATTCAAAGTAGTTA        ATG GGG                                                                                                                                                                                     
TATAAAT                    ----T                      --------   -   GGACTTTAAAGTGTTGCAATCAGTTAAATGGGGGAGGCAGTTTAAAAAGACAATCACTTGTACTGCAAAACGTTTATGGGGAGACTTCAAAACGTGAATACACGTTTTACGGGGGGTTTGAATTTTTAAATATAATAAAAAAAGAATTTTTGTTTGTTAATTATCAATTTATAATTTCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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