SE2020577

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5779
  • Medicago truncatula
  • SE2020577
  • Mutator
  • M40
  • AC235663:38607-39042
  • TTTAAAAAA
  • AAAGGCTTAATTGCATGTTTGATCCCTTATGTTTATTTTAGGTTTCAAATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAAA                        C                    C  A   ATCCC                                C    --       T    C    CC   A       C     G         C    -C   CAC   ATGATATTGAGTTTAATAAAATAGAAAAATTAAAAAAATGTTTTAAAACTGATTTTC
      AAAGGCTTAATTGCATGTTTGATC CTTATGTTTATTTTAGGTTT AA TTG     TTATGTTTTAAAAGTTTCAAGTTGGTCCCTTA GTTT  AAAGTTT CAAG TGAT  AAA TGTTACT ACGTT GAATAAGTT GTCT  TTC   GAC                                                         
      |||||||||||||||||||||||| |||||||||||||||||||| || |||     |||||||||||||||||||||||||||||||| ||||  ||||||| |||| ||||  ||| ||||||| ||||| ||||||||| ||||  |||   |||                                                         T
      TTTCCGAATTAACGTACAAACTAG GAATACAAATAAAATCTAAA TT AAT     AATACAAAATTTTCAAAGTTCAACTAGGGAAT CAAA  TTTCAAA GTTC ACTA  TTT GCAATGA TGTAA CTTATTCAA CAGG  AAG   CAG                                                         
AAAAAA                        T                    A  C   CAATA                                A    AT       -    A    AA   C       C     A         T    AA   ---   TGAACTGACCAATTTCTAAATCCAACTGTTACACCCCACCACCTTAAATTGAATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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