SE2020578

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5780
  • Medicago truncatula
  • SE2020578
  • Mutator
  • M45
  • MtChr3:28762223-28762411
  • ATTATGTCG
  • GGGTTATGTTAACCGGTGCTCCGGGCATTGGTTAAAGAAACCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATGTC    T                 --      T      A   AC    AAA      --    AAATTAAAATAAATATTTTTTAGACCT
        GGGT ATGTTAACCGGTGCTCC  GGGCAT GGTTAA GAA  CAAA   AGAAAA  TTTT                           
        |||| |||||||||||||||||  |||||| |||||| |||  ||||   ||||||  ||||                            
        CCCA TACAATTGGCCACGAGG  CCCGTG CCAATT CTT  GTTT   TCATTG  GTGT                           
TGTATTAT    T                 AC      C      C   -C    ATA      TA    AACTTTGAACACGTCAGTTGAGTAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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