Plant MITE

SE2020586

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5788
Medicago truncatula
SE2020586
Mutator
M4
MtChr5:33832449-33832774
TATTTTTAG
TAGGGTTAATAGTGTTTTACCTTCTATAATATAGGTCATTTCCAGTTTTCCTCCTGTAAAATATTTTTTTTGGATTCCGTCCTTGTAATTTAAAGATTTTTTGGTTTTAGACCTTCATTGA

Secondary structure and sequence

TSD TIR

5'

3'

TATTTT       -             C    A       G       C A        -C      A  A                            A   A            A         T  AAATTTTGCC   TGTAATTTGAGAAAATTTTGATTTACCCC
      TAGGGTT AATAGTGTTTTAC TTCT TAATATA GTCATTT C GTTTTCCT  CTGTAA AT TTTTTTTTGGATTCCGTCCTTGTAATTT AAG TTTTTTGGTTTT GACCTTCAT GA          CTC                             
      ||||||| ||||||||||||| |||| ||||||| ||||||| | ||||||||  |||||| || |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| ||          |||                              
      ATTCCAA TTATTACAAAATG AGGA ATTATAT CAGTAAA G CAAAAGGG  GACATT TA AAGAAAAACCTAAGGCAGGAACATTAAA TTC AAAAAATCAAAA CTGGAAGTA CT          TAA                             
 TTTTT       A             -    C       A       A C        AA      G  A                            C   -            C         -  ----------   AACTGACATGTTTTAGCTACTATACTGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020586

TATTTTTAGGGTTAATAGTGTTTTACCTTCTATAATATAGGTCATTTCCAGTTTTCCTCCTGTAAAATATTTTTTTTGGATTCCGTCCTTGTAATTTAAAGATTTTTTGGTTTTAGACCTTCATTGAAAATTTTGCCCTCTGTAATTTGAGAAAATTTTGATTTACCCCCTGTCATATCATCGATTTTGTACAGTCAAAATTCATGAAGGTCCAAAACTAAAAAACTTCAAATTACAAGGACGGAATCCAAAAAGAAAATGTTACAGAAGGGAAAACCGAAAATGACATATATTACAGGAGTAAAACATTATTAAACCTTATTTTT

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