SE2030590

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5792
  • Medicago truncatula
  • SE2030590
  • hAT
  • Hat11
  • MtChr1:16622873-16623613
  • CTCTCTTC
  • CTGTGAAGCCCTGATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCTCTTC          CT     TTCAAAAT     ATGTATCGTATCCCTTGTGTATCATGCACCGATATCTGCCCGATACTTCCCGATACGTATCGGGAGAGTATCCAAATATTAAATTTTATTTTTTAAGAAAATAATTTTCCGATACGCACGGATACTTGTGTTTTTTTTATATTATTTTGATTTATGTGCTTTTTTTTTGTAAAAAATAAGAATAAAAACATTATATTACTAATATATATACATTTCCTTTATCTTTCTTTGGTGCCAGTACGACCCACACCATACCACAGAAACAATTTCATCTTCCCCTTTTTAAAAAATTAGGTTTTCAACTTTTTCTTCCAAAATGGTCGCCTTCCACTT
        CTGTGAAGCC  GATAC        GGATA                                                                                                                                                                                                                                                                                                                                             
        ||||||||||  |||||        |||||                                                                                                                                                                                                                                                                                                                                             T
        GACACTTCGG  CTATG        GCTAT                                                                                                                                                                                                                                                                                                                                             
CTTCTCTC          AC     --CTCTAT     AACGTGGCTATGCAACTATGCCTTTTTAAAGTTTTTAGTTCTATGCTATGCGGACTCTATGCAATTATTTTTTTATATATATTAATTTACATATTATATTAATATTAGAAAAAAAATTATACGTTTATATAATCATTTGTGTTCTTTGATCTGAGCATCGTGTAATTGTATTTATATTTATTATAACTGCTAATTCTCTCACCACTAATCAGTTAATGTATGCGTTTTATATGGTTTTTCTCGTGGTATTCACAATATAGTTACGATATGATATAGGTTTTCCTTTTAACAATTACGATATGATATAGCTAGGTTTTTTCTTCGTGATATAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3