SE2010598

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5800
  • Medicago truncatula
  • SE2010598
  • Tc1/Mariner
  • St16
  • MtChr2:4628566-4628851
  • TA
  • TACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                            C         TTGCACACATA     --     GA  -AAAGTAG  A     C    C      -----AC   -AT      --      CTATTGGTTTGTTTTTCTTTAAGGAAAA
TACTCCCTCCGTTTCAAAATGAGTGTCG TTTAGCCAA           TTAAG  GAATG  AT        TC AATGT ATAG AATTTT       CAA   TATCCT  AATCAA                            
|||||||||||||||||||||||||||| |||||||||           |||||  |||||  ||        || ||||| |||| ||||||       |||   ||||||  ||||||                            A
ATGAGGGAGGCAAAGTTTTACTCACAGC AAATCGGTT           AGTTT  CTTAC  TG        AG TTACG TATT TTGAAA       GTT   ATGGGA  TATTAT                            
                            A         TTTTTTAACAA     TA     AG  AAAGCCAA  G     T    A      AAGAAAA   AAC      AG      GATACAATGTGATGAAGGTTTCATAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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