Plant MITE

SE2020603

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5805
Medicago truncatula
SE2020603
Mutator
M74
MtChr4:24324207-24324414
TTAAAAAAT
GGGTCATGCTAACTTGTGCCCTTAGGGCACAAGTTAAGGAGCTTAAAATAGAA

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAAAAT   TC                  ------AG    C             T  A      ----T    -- AGTAAATTTTATATTGAAAGGATAACTTTT
         GGG  ATGCTAACTTGTGCCCTT        GGCA AAGTTAAGGAGCT AA ATAGAA     TAGA  A                              
         |||  ||||||||||||||||||        |||| ||||||||||||| || ||||||     ||||  |                               
         CCC  TACGATTGAACACGGGAA        CCGT TTCAATTCTTTGG TT TATCTT     AAGA  C                              
TAAAAAATT   TT                  CACCAACA    A             T  A      CAAAA    AC TTTAACACGTAAGTTAGAGAATTTTCAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020603

TTAAAAAATGGGTCATGCTAACTTGTGCCCTTAGGGCACAAGTTAAGGAGCTTAAAATAGAATTAGAAAGTAAATTTTATATTGAAAGGATAACTTTTGAAACTTTTAAGAGATTGAATGCACAATTTCCAAGAAAAAACTTCTATATTTGGTTTCTTAACTTATGCCACAACCACAAGGGCACAAGTTAGCATTTCCCTTAAAAAAT

Copy Cancel