SE2010607

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5809
  • Medicago truncatula
  • SE2010607
  • Tc1/Mariner
  • St24
  • AC235022:41621-41903
  • TA
  • TACTCCCTCTGTCCCAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
                    ATAAGACG      CCATTT          ---------  GAAATGTAATTAATATTGTGTGGGGAAGAGAAATTATGAGTTGTTTTACAAAATTATCCTTAATAAATGGTATGGAAAAGATAAATGA
TACTCCCTCTGTCCCAAATT        TTTTGA      CACACGTATT         AA                                                                                        
||||||||||||||||||||        ||||||      ||||||||||         ||                                                                                         
ATGAGGGAGGCAGGGTTTAA        GAAACT      TCTTTTTTTT         TA                                                                                        
                    CATACAAT      ------          AACAGGGTT  ATATACAGCGAAATGTTATGATTACTTTATAATTACAATAAAAAGGATAATATAGGAATTGATAATTAATGAGGAAGAAAGTTAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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