SE2050608

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5810
  • Medicago truncatula
  • SE2050608
  • PIF/harbinger
  • To6
  • MtChr3:43903042-43903396
  • TTA
  • AGACCATCCACAATGGTGTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                T     ---A          ACCGAGCTAAATAGGCACCCCATTGTGGAGTGATATTTATTGGTGCTTATATACAAGGGTGTTTATATAAGGACCTTCTCTCTCTTCATTTTTGTGTGTGAATTTCGTTTAATATTTTCTAATAAAATAAATGAGTGTTTA
  AGACCATCCACAATGG GTTTC    CCTATTTAGC                                                                                                                                             
  |||||||||||||||| |||||    ||||||||||                                                                                                                                              
  TCTGGTAGGTGTTACC CGAGG    CAACCCATGA                                                                                                                                             
AT                T     AGAT          ATTCACCCGGTGTGTACATGTGTAGTAAATAAAATATTTAAAAATTACAGTTATGGATTATTCGTGGGTTAAGTAAGTCGGGTCGTGGTGTTGTTTTAAATGATTATCCAGAGTGATTATTGAGATATAATAATGTAGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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