SE2020610

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5812
  • Medicago truncatula
  • SE2020610
  • Mutator
  • M19
  • MtChr2:20745467-20746024
  • TTTAATATA
  • AGGGTTAAATATGTTTTTGGTCCCTATAAAATTGAGACCTTTTAAGCTTAGTCCTTACTTAATTTTAATAGTTATTTTAGTCCCTGCATAAAAATCATGCACTCGGTATTAGTCCCT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAATAT                                T   - C        C          C               A         C    T     TC  GC   --C   A         GCTC  TT    -            A G A                     A       GTAA   T   A         CTA      CCTCC    AAAATTATTGCAAAATTTAATTTCTACATCCAGATTTTATTACTTTTATCTTTAACTTTT
        AGGGTTAAATATGTTTTTGGTCCCTATAAAAT GAG A CTTTTAAG TTAGTCCTTA TTAATTTTAATAGTT TTTTAGTCC TGCA AAAAA  AT  ACT   GGT TTAGTCCCT    AA  CAAA TTTGTTTAATTG T C TAAACTCTTAAGTTTTTGAAC ATTTTTT    ACG GTT AGAACATTA   AAAGTT     GCAA                                                            
        |||||||||||||||||||||||||||||||| ||| | |||||||| |||||||||| ||||||||||||||| ||||||||| |||| |||||  ||  |||   ||| |||||||||    ||  |||| |||||||||||| | | ||||||||||||||||||||| |||||||    ||| ||| |||||||||   ||||||     ||||                                                             
        TCCCAATTTATACAAAAGCCAGGGATATTTTG CTC T GAAGATTC AATCAGGAAT AATTAAAATTATCAA AAAATCAGG ATGT TTTTT  TA  TGA   TTA AATCAGGGG    TT  GTTT AAACAAATTAAT A G ATTTGAGAATTTAAAAACTTG TAAAAAA    TGT CAA TCTTGTGAT   TTTCAA     AGTA                                                            
ATATAAAT                                -   C T        A          -               A         T    T     -T  AA   AGA   A         ACAA  TT    C            - G A                     C       ACTG   T   A         -AC      -----    AATGATTTTAAATTTTAAAAAATTGTACTTTACTTAATTTATACTTAAAAACTTTTGCTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End