SE2010611

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5813
  • Medicago truncatula
  • SE2010611
  • Tc1/Mariner
  • St21
  • MtChr3:10338502-10338823
  • TA
  • TACTCTCTCCGTCCCATATTATAAGAAAAATAAAAATCA

Secondary structure and sequence

TSD    TIR
5'



3' 
              CAT        A    T    A   CACTTATTAAGA      AAACATAGTAGTTTGTAACATAATTTTTTGTATTATCTTTGAAATAAGTTTTATAGGAAGATGTAAAAACAATTTTCATTGGTAGTTGATTATAGAGAAAATGAAAAAT
TACTCTCTCCGTCC   ATTATAAG AAAA AAAA TCA            AAACTA                                                                                                             
||||||||||||||   |||||||| |||| |||| |||            ||||||                                                                                                              
ATGAGGGAGGCAGG   TAATATTC TTTT TTTT AGT            AGAAAC                                                                                                             
              ATT        G    -    A   ---------AAA      AGAGTTTAATATTCGTTTTTTATGTTGAAAATAGTATAAATTAATACAAAAAAGTTGTCTAATAGAAAAGGTTTCCTTTTAATTTTCGTTTCACGTAAGTTAAACGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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