SE2020612

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5814
  • Medicago truncatula
  • SE2020612
  • Mutator
  • M52
  • MtChr6:9198584-9198878
  • TTTAAAAAA
  • AAAGACTTAATTACATTTTTGGTCCTCTAACTATTTAGTTGGTATCGGATTGGTCCTCTAACTAAAAATTGATTTATTTTGGTCCTCTAAGTTTCTCACCGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAAA    A  T      A                                                                                   C     --CT    TTAGTCCTTTCTGTTAGTTTTATTCAAATA
      AAAG CT AATTAC TTTTTGGTCCTCTAACTATTTAGTTGGTATCGGATTGGTCCTCTAACTAAAAATTGATTTATTTTGGTCCTCTAAGTTTCTCA CGTTA    ACAT                              
      |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    ||||                              A
      TTTC GA TTAATG AAAAACCAGGAGATTGATAAATCAACCATAGCCTAACCAGGAGATTGATTTTTAACTAAATAAAACTAGGAGATTCAAAGAGT GCAAT    TCCA                              
AAAAAA    C  T      G                                                                                   A     ATCC    GTCCATGGGTATATTGTGTTTGGGATTGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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