SE2050615

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5817
  • Medicago truncatula
  • SE2050615
  • PIF/harbinger
  • To21
  • MtChr8:23316116-23316552
  • TTA
  • AGGCTTTGTTTGCGAGTTTTGAGGGGAGGGGAAGGAAAGGTTAGGAGGGGAAGG

Secondary structure and sequence

TSD    TIR
5'



3'
TT                  ----   -           A  AA   TTA           GAGAAA    -  A   CCTTC                AA     CC    AA      AGA   A   CTTAT      -----    TACT -     CCATTTTTTCTCTTAAAATC  -   ATTGTGTTATACTTTGTAATTTATCATGTAAATTATAATTGGAATTTGAATTATT
  AGGCTTTGTTTGCGAGTT    TTG AGGGGAGGGGA GG  AGG   GGAGGGGAAGG      GGAG GG AAG     CCCTTGTTTGGGAGTT  AGAAA  AACA  GAAAGG   TGG GGG     GTGATA     ATTT    A TTTTA                    AA TAC                                                       
  ||||||||||||||||||    ||| ||||||||||| ||  |||   |||||||||||      |||| || |||     ||||||||||||||||  |||||  ||||  ||||||   ||| |||     ||||||     ||||    | |||||                    || |||                                                       A
  TCCGAAACAAACGCTCAA    AAC TCCCCTCCCCT CC  TCC   CCTCCCTTTCC      CCTC CC TTT     GGGAACAAACCCTCAA  TTTTT  TTGT  CTTTTC   ACC CCC     TTCCTG     AACA    G TTAAA                    AT CAA                                                       
AT                  CCCA   C           -  CC   ---           -GAACA    T  A   -----                AA     --    CC      AAA   C   AAAAC      AAGTA    ---- G     -------------------A  T   GGGGGTTTAACCCCCAAAACCCCCAATTTGTATGTTTAACTGTTAAAACAGGAGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End