Plant MITE

SE2010616

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5818
Medicago truncatula
SE2010616
Tc1/Mariner
St14
MtChr3:38176873-38177170
TA
TACTACCTCCGTCCCTAAATATAGGACCCTTTTG

Secondary structure and sequence

TSD TIR

5'

3'

                  A        C      CCAAAATTAC       AAAAAAGT     GTAGTATTAAATTTGTATATAATTACTATTGTTTTTACAATTTTATCCTTAAGGGAGAGAGTTAATTTATGTTTTCAACATAATATTTATT
TACTACCTCCGTCCCTAA TATAGGAC CTTTTG          GGAGATT        TGGTT                                                                                           
|||||||||||||||||| |||||||| ||||||          |||||||        |||||                                                                                           C
ATGATGGAGGCAGGGATT ATATTCTG GAAAAC          TCTTTAA        CAGGG                                                                                           
                  A        T      ----------       ---AAAAA     AAAAATATTCTGGGGAAACCATAAAGGTTCATGTAATTAATAAAGAAATGATTGTATGGGAATAAATAAAACGTAGAAAAAGAAGTTAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010616

TACTACCTCCGTCCCTAAATATAGGACCCTTTTGCCAAAATTACGGAGATTAAAAAAGTTGGTTGTAGTATTAAATTTGTATATAATTACTATTGTTTTTACAATTTTATCCTTAAGGGAGAGAGTTAATTTATGTTTTCAACATAATATTTATTCTTGATTGAAGAAAAAGATGCAAAATAAATAAGGGTATGTTAGTAAAGAAATAATTAATGTACTTGGAAATACCAAAGGGGTCTTATAAAAAGGGACAAAAAAATTTCTCAAAAGTGTCTTATAATTAGGGACGGAGGTAGTA

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