Plant MITE

SE2020617

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5819
Medicago truncatula
SE2020617
Mutator
M11
MtChr8:15760381-15760573
TTATTTATT
GGGTCTTGTTAACGAGTGC

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTATT   TCT             CCCCATGAC         T    C    TT      TTATTCTTT        CAACTATTACAATTTTC
         GGG   TGTTAACGAGTGC         ACTCTTTAA CATT TAAA  TAGTAA         TAAAAAGT                 
         |||   |||||||||||||         ||||||||| |||| ||||  ||||||         ||||||||                  
         CCC   ACAATTGCTCACG         TGAGAAATT GTGA ATTT  ATCATT         ATTTTTCA                 
TTATTTATT   TTT             AGAACCCCA         C    A    --      -CAAAAATT        ACACATTACTTACGTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020617

TTATTTATTGGGTCTTGTTAACGAGTGCCCCCATGACACTCTTTAATCATTCTAAATTTAGTAATTATTCTTTTAAAAAGTCAACTATTACAATTTTCAATGCATTCATTACACAACTTTTTATTAAAAACTTACTATTTAAAGTGCTTAAAGAGTACCCCAAGAGCACTCGTTAACATTTCCCTTATTTATT

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