SE2030621

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5823
  • Medicago truncatula
  • SE2030621
  • hAT
  • Hat5
  • MtChr5:32450880-32451193
  • ATTATAAA
  • TTATAAACAAGGGCGGAGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
A      A  AG         ACCCCCC         G  --- ACTAGCCGAGGCTCAGCTCCAATTTTCTTTGTAGCAAGCCCAGCCATTACTAGAACTTTTAGCTTTTCCTACGGATTTACCTGCAAATTTTTATGTAAATTCCGTAGGAAACACA
 TTATAA CA  GGCGGAGCC       AGCTAGCCT GG   C                                                                                                                   
 |||||| ||  |||||||||       ||||||||| ||   |                                                                                                                   T
 AATATT GT  CCGCCTCGG       AAATATCTC GG   C                                                                                                                   
A      A  CA         -CATTTA         -  ACA GTTTTTTCAATAGCGTTTTACAATGAAGGAAGGATGCTTATTAAAGTGTAAAGGACGTCTATTAAAGTGTAAAGGACGCCTTAGACGTCCTTTAGGATCCGTTTTAGACGTCCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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