SE2010622

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5824
  • Medicago truncatula
  • SE2010622
  • Tc1/Mariner
  • St18
  • MtChr3:40271049-40271336
  • TA
  • TACTCCATCCGTTTTAAAATGAGTGTTATTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                      G    A     ACT     - A  AATTGTTTCAAAATGAACGTCACTTTACATTTTCAATACAATTTTAACTTTTTCTTCCAATTTTACCCTCAATAAATACTCCAACTTTTCTCTCAGTAC
TACTCCATCCGTTTTAAAATGA TGTT TTTTA   AAAAA G GA                                                                                                   
|||||||||||||||||||||| |||| |||||   ||||| | ||                                                                                                   A
ATGAGGTAGGCAAAGTTTTACT ACAG AAAAT   GTTAA G TG                                                                                                   
                      A    C     -CG     C -  TATCTAATTACTTAACTTACTTTATTAGTAATCTGTTGTGAAAATGATTTGACGGGAATGAAATATTCTTTTTATGTTTGAATTTCAACGTAACTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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