Plant MITE

SE2020626

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5828
Medicago truncatula
SE2020626
Mutator
M57
MtChr6:22634953-22635160
ATTGAATGC
ATTGAATGCGAGTCAAGATC

Secondary structure and sequence

TSD TIR

5'

3'

     G    C A  C      ATCTC   TTATTTCCCACTCCATTTCCTCAATTTAGAGAGATAAAAACATAAAAAATAAAAAATAATTAATGATAGTGGGACTC
  ATT AATG G GT AAGATC     TGG                                                                             
  ||| |||| | || ||||||     |||                                                                             A
  TAA TTAC C CA TTCTAG     GAG                                                                             
CG   G    - -  A      ---GA   GTAAACATTTTTATTTACTTTCTACAGTAAACCTCCCTCTATCTGTTTTTTTTTTCCACCACCCAGGATAGTAATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020626

ATTGAATGCGAGTCAAGATCATCTCTGGTTATTTCCCACTCCATTTCCTCAATTTAGAGAGATAAAAACATAAAAAATAAAAAATAATTAATGATAGTGGGACTCACTTAATGATAGGACCCACCACCTTTTTTTTTTGTCTATCTCCCTCCAAATGACATCTTTCATTTATTTTTACAAATGGAGAGGATCTTAACCCATTGAATGC

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